Abstract Clustering has gained widespread use, especially for static data. However, the rapid growth of spatio-temporal data from numerous instruments, such as earth-orbiting satellites, has created a need for spatio-temporal clustering methods to extract and monitor dynamic clusters. Dynamic spatiotemporal clustering faces two major challenges: First, the clusters are dynamic and may change in size, shape, and statistical properties over time. Second, numerous spatio-temporal data are incomplete, noisy, heterogeneous, and highly variable (over space and time). We propose a new spatiotemporal data mining paradigm, to autonomously identify dynamic spatio-temporal clusters in the presence of noise and missing data. Our proposed approach is more robust than traditional clustering and image segmentation techniques in the case of dynamic patterns, non-stationary, heterogeneity, and missing data. We demonstrate our method’s performance on a real-world application of monitoring in-land water bodies on a global scale