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optnetaligncpp

2020-02-19 | |  35 |   0 |   0

optnetaligncpp

Optimizing network aligner

Quick start

Install the C++ Boost libraries on your system, then do the following:

make optnetalignubuntu
./optnetalign --net1 scere.net --net2 dmela.net --total --s3 --bitscores sc-dm.sim --blastsum --annotations1 scere.annos --annotations2 dmela.annos --cxrate 0.05 --cxswappb 0.75 --mutrate 0.05 --mutswappb 0.0001 --oneobjrate 0.75 --dynparams --popsize 200 --generations 1000000000 --hillclimbiters 10000  --timelimit 720 --outprefix sc-dm1 --finalstats >> sc-dm1.finalstats

For more information, see manual.tex


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