资源论文MLRDA: A Multi-Task Semi-Supervised Learning Framework for Drug-Drug Interaction Prediction

MLRDA: A Multi-Task Semi-Supervised Learning Framework for Drug-Drug Interaction Prediction

2019-10-10 | |  100 |   62 |   0

Abstract Drug-drug interactions (DDIs) are a major cause of preventable hospitalizations and deaths. Recently, researchers in the AI community try to improve DDI prediction in two directions, incorporating multiple drug features to better model the pharmacodynamics and adopting multi-task learning to exploit associations among DDI types. However, these two directions are challenging to reconcile due to the sparse nature of the DDI labels which inflflates the risk of overfifitting of multi-task learning models when incorporating multiple drug features. In this paper, we propose a multi-task semisupervised learning framework MLRDA for DDI prediction. MLRDA effectively exploits information that is benefificial for DDI prediction in unlabeled drug data by leveraging a novel unsupervised disentangling loss CuXCov. The CuXCov loss cooperates with the classifification loss to disentangle the DDI prediction relevant part from the irrelevant part in a representation learnt by an autoencoder, which helps to ease the diffificulty in mining useful information for DDI prediction in both labeled and unlabeled drug data. Moreover, MLRDA adopts a multi-task learning framework to exploit associations among DDI types. Experimental results on real-world datasets demonstrate that MLRDA signifificantly outperforms state-of-the-art DDI prediction methods by up to 10.3% in AUPR

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